PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 346aa    MW: 38600.5 Da    PI: 10.0549
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.92.3e-2240133186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                     +Wt +e+ aLi+a+r+++ +l+r++lk+++W+ev++++      + + +++++qC++k+e+l+kry+ + ++ ++    +s+sss++++f++++
  XP_004492904.1  40 CWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVtarcpNASPTNKTAVQCRHKMEKLRKRYRSEIQRLRSLpipRSRSSSSWVHFKSMD 133
                     8***************************************9999*****************************99865559999*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2039135No hitNo description
PROSITE profilePS500906.28441102IPR017877Myb-like domain
SMARTSM005951.0E-1148140IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MASSPPSSPT DSNPPSAVPL PLPSSAPPPT TSSRRLPPPC WTPEETAALI DAYRDKWYSL  60
GRTNLKATHW QEVADAVTAR CPNASPTNKT AVQCRHKMEK LRKRYRSEIQ RLRSLPIPRS  120
RSSSSWVHFK SMDSMEKGPS PPPKLENPNH HRETLDENDD LDDDDLYEEL KSAAAGGSGS  180
GNTRSLDKLY RNGASGGGFR IRIPTGVSVA QPGSKFFGHQ KMNNNQSESG SRGCINGGTR  240
LVKERVGLGK REREREVERE RDPVGEMVSA IKVLRDGFVR MEQMKMEMAR EIETMRMEME  300
MKRTEMILES QQRIVEAFAK AVSEKNKKKL HKGNSNNNTV ASPSES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1491292e-84AC149129.3 Medicago truncatula chromosome 7 clone mth2-139m18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492904.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA2Q1W11e-134A2Q1W1_MEDTR; MADF; Homeodomain-like
STRINGGLYMA08G05630.11e-114(Glycine max)
STRINGGLYMA09G38050.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-50Trihelix family protein